Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.400 Biomarker group BEFREE Cytokeratin 7 and especially cytokeratin 17 highlighted the presence of ducts in the hyperplastic lesion, which are not present in adenomas. p16 and p53 were negative and Ki-67 immunostaining demonstrated similar low proliferation indices for normal and hyperplastic glands. 31593035 2020
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.400 GeneticVariation group BEFREE Patients with variants outside these criteria had FAP-related extracolonic manifestations, colorectal cancer aged <40, somatic KRAS c.34G > T variant in the tumor or a first-degree relative with >10 adenomas. 31527860 2020
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.400 GeneticVariation group BEFREE Twenty-five CRC biopsies and 15 adenoma were analyzed for KRAS mutations by DNA sequencing (Sanger sequencing), and all 50 patients (35 CRCs and 15 adenomas) were evaluated by immunohistochemistry for the CR-1 protein expression. 31692030 2020
Entrez Id: 4360
Gene Symbol: MRC1
MRC1
0.100 GeneticVariation group BEFREE No significant differences were observed for dMMR/MSI in relation to MMR variants and location of adenomas. 31695176 2020
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.100 Biomarker group BEFREE Cytokeratin 7 and especially cytokeratin 17 highlighted the presence of ducts in the hyperplastic lesion, which are not present in adenomas. p16 and p53 were negative and Ki-67 immunostaining demonstrated similar low proliferation indices for normal and hyperplastic glands. 31593035 2020
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.100 Biomarker group BEFREE Cytokeratin 7 and especially cytokeratin 17 highlighted the presence of ducts in the hyperplastic lesion, which are not present in adenomas. p16 and p53 were negative and Ki-67 immunostaining demonstrated similar low proliferation indices for normal and hyperplastic glands. 31593035 2020
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.100 Biomarker group BEFREE Our three steps bioinformatics approach identified ABCB1, HPGD, BCL2, TIAM1, TLR3, and PDCD4 as common targets for mir-21 in both of adenoma as well as adenocarcinoma suggesting they are biomarkers for early CRC. 31756546 2020
Entrez Id: 5594
Gene Symbol: MAPK1
MAPK1
0.050 Biomarker group BEFREE It could be concluded that N. domestica Thunb. constituents affect both apoptosis and Akt-signaling pathways during the stages of early and intermediate adenoma through interaction with the targets CASP3 and MAPK1 (ErC2) while during the stages of late adenoma and carcinoma, the compounds acts through the p53 and ErbB signaling pathways. 31760157 2020
Entrez Id: 7173
Gene Symbol: TPO
TPO
0.050 Biomarker group BEFREE Significant lowering of TPO was revealed in oncocytic adenomas and papillary carcinomas. 31777257 2020
Entrez Id: 27250
Gene Symbol: PDCD4
PDCD4
0.040 Biomarker group BEFREE Our three steps bioinformatics approach identified ABCB1, HPGD, BCL2, TIAM1, TLR3, and PDCD4 as common targets for mir-21 in both of adenoma as well as adenocarcinoma suggesting they are biomarkers for early CRC. 31756546 2020
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.030 Biomarker group BEFREE It could be concluded that N. domestica Thunb. constituents affect both apoptosis and Akt-signaling pathways during the stages of early and intermediate adenoma through interaction with the targets CASP3 and MAPK1 (ErC2) while during the stages of late adenoma and carcinoma, the compounds acts through the p53 and ErbB signaling pathways. 31760157 2020
Entrez Id: 3855
Gene Symbol: KRT7
KRT7
0.030 Biomarker group BEFREE Cytokeratin 7 and especially cytokeratin 17 highlighted the presence of ducts in the hyperplastic lesion, which are not present in adenomas. p16 and p53 were negative and Ki-67 immunostaining demonstrated similar low proliferation indices for normal and hyperplastic glands. 31593035 2020
Entrez Id: 2867
Gene Symbol: FFAR2
FFAR2
0.020 AlteredExpression group BEFREE The analysis of clinical specimens revealed that the expression of GPR43 and GPR109A gradually decreased from human normal colonic tissue to adenoma to carcinoma. 31734354 2020
Entrez Id: 114131
Gene Symbol: UCN3
UCN3
0.020 AlteredExpression group BEFREE We further employed this technique in HKG mice to determine Hnf1b+ cells give rise to adenomas that express SPC and TTF1. 31570790 2020
Entrez Id: 7270
Gene Symbol: TTF1
TTF1
0.020 AlteredExpression group BEFREE We further employed this technique in HKG mice to determine Hnf1b+ cells give rise to adenomas that express SPC and TTF1. 31570790 2020
Entrez Id: 116844
Gene Symbol: LRG1
LRG1
0.020 Biomarker group BEFREE Two panels, one consisting of Hp and LRG1 and one of Hp, LRG1, RBP4 and FN1 were identified for high-risk adenomas and CRCs detection (sensitivity of 66 and 62%, respectively, at specificity of 95%). 31784980 2020
Entrez Id: 65009
Gene Symbol: NDRG4
NDRG4
0.020 Biomarker group BEFREE As for adenoma detection, the DOR of methylated NDRG4 is higher than that for CRC (CRC vs. adenoma: 54.86 vs. 57.22). 31097151 2020
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.020 Biomarker group BEFREE Using the tamoxifen inducible Hnf1b:CreER<sup>T2</sup> (H) transgenic mouse crossed to the LsL-Kras<sup>G12D</sup> (K) transgenic mouse, we recently discovered that an Hnf1b positive cell type in the lung is sensitive to adenoma formation when expressing a mutant Kras<sup>G12D</sup> allele. 31570790 2020
Entrez Id: 51660
Gene Symbol: MPC1
MPC1
0.010 Biomarker group BEFREE Moreover, in two distinct CRC mouse models, loss of Mpc1 prior to a tumorigenic stimulus doubled the frequency of adenoma formation and produced higher grade tumors. 31813825 2020
Entrez Id: 1378
Gene Symbol: CR1
CR1
0.010 AlteredExpression group BEFREE Twenty-five CRC biopsies and 15 adenoma were analyzed for KRAS mutations by DNA sequencing (Sanger sequencing), and all 50 patients (35 CRCs and 15 adenomas) were evaluated by immunohistochemistry for the CR-1 protein expression. 31692030 2020
Entrez Id: 3872
Gene Symbol: KRT17
KRT17
0.010 Biomarker group BEFREE Cytokeratin 7 and especially cytokeratin 17 highlighted the presence of ducts in the hyperplastic lesion, which are not present in adenomas. p16 and p53 were negative and Ki-67 immunostaining demonstrated similar low proliferation indices for normal and hyperplastic glands. 31593035 2020
Entrez Id: 6997
Gene Symbol: TDGF1
TDGF1
0.010 AlteredExpression group BEFREE Twenty-five CRC biopsies and 15 adenoma were analyzed for KRAS mutations by DNA sequencing (Sanger sequencing), and all 50 patients (35 CRCs and 15 adenomas) were evaluated by immunohistochemistry for the CR-1 protein expression. 31692030 2020
Entrez Id: 338442
Gene Symbol: HCAR2
HCAR2
0.010 AlteredExpression group BEFREE The analysis of clinical specimens revealed that the expression of GPR43 and GPR109A gradually decreased from human normal colonic tissue to adenoma to carcinoma. 31734354 2020
Entrez Id: 309
Gene Symbol: ANXA6
ANXA6
0.010 Biomarker group BEFREE A protein panel, consisting of haptoglobin (Hp), LAMP1, SYNE2 and ANXA6, was identified for the detection of high-risk adenomas (sensitivity of 53% at specificity of 95%). 31784980 2020
Entrez Id: 3916
Gene Symbol: LAMP1
LAMP1
0.010 Biomarker group BEFREE A protein panel, consisting of haptoglobin (Hp), LAMP1, SYNE2 and ANXA6, was identified for the detection of high-risk adenomas (sensitivity of 53% at specificity of 95%). 31784980 2020